Tools & web servers
Web servers developed at SciWhyLab, or by its members before the lab was founded. Free to use.
Binding-site prediction & interaction analysis
Dinucleotide-specific DNA-binding site prediction from protein sequence (PSSM-based).
Open tool →Dinucleotide-specific RNA-binding site prediction from protein sequence.
Open tool →DNA-binding site prediction from protein sequences via computed PSSM.
Open tool →Legacy DNA-binding site prediction from single sequences (SDCPred recommended).
Open tool →Pairwise protein–protein binding-site prediction across two sequences.
Open tool →Carbohydrate-binding site prediction from protein sequence or PSSM.
Open tool →Expected impact of point mutations in a protein–DNA complex.
Open tool →Gentle Integration of Gene Expression And Structural Attributes — predicts DNA-binding proteins in human, mouse and Arabidopsis by fusing expression and sequence signals.
Open tool →DNA shape / indirect readout
Genome-wide DNA conformational-dynamics dictionary (13 shape parameters).
Open tool →Sequence- and shape-energy specificities from a base–amino-acid perspective.
Open tool →Solvent accessibility & structural analysis
Real-valued relative solvent accessibility prediction from sequence.
Open tool →Buried / exposed solvent-accessibility state prediction from sequence.
Open tool →Computes and visualises relative solvent accessibility from structure.
Open tool →Solvent accessibility via highest-observed-ASA reference normalisation.
Open tool →Clusters of conserved residues, especially for DNA-binding proteins.
Open tool →Structural-property prediction for transmembrane helical proteins.
Open tool →Transmembrane-strand prediction in beta-barrel membrane proteins.
Open tool →