Script to compute all binding sites.
	process-bs-pred.sh
Script to find pssm using blast program (needed for binding site prediction)
	get-pssm.sh
The directory in which individual binding site prediction tools are provided.
	binding-sites/
Script to convert binding site prediction scores to protein level features.
	make-feature-matrix-bs.R

Script to compute sequence FT and DBP annotations for proteins 
	get-FT.sh
Script to assign gene name to every Uniprot proteins
	get-geneID.sh
Script to assign gene ontologies to every Uniprot proteins
	get-GO.sh
Script to assign keyword terms to every Uniprot proteins
	get-KW.sh
Script to assign a pfam ID to every Uniprot proteins
	get-pfam.sh
Script to convert gene expression matrix to histograms.
	create-gene-wise-histos-exp.R
Script to create a GO-based profile from expression histograms.
	create-GO-profiles-genes.R