
To install:
1. Copy the bins/ directory to the location where you wish to install it.
2. Edit the installation path in bins/pprobe.sh (top line), in the install directory.


To get predictions:
1. Prepare a pssm fine using NCB blastpgp program for the query and probe proteins.
2. Run pprobe with query and probe protein pssm file names as arguments.
        pprobe.sh <query pssm> <probe pssm>
   If pprobe is not in your PATH environment, use full path for install directory)
        $installdir/pprobe.sh <query pssm> <probe pssm>
Results:
        Three files are produced:
        $name1-$name2-pprobe.txt  [All predicted raw scores ];
        $name1-$name2-pprobe-top20.txt  [Top 20 residues ];
        $name1-$name2-pprobe.jpg  [Sequence mapped graphical outputs ];
